bugphyzz - A harmonized data resource and software for enrichment analysis of microbial physiologies
bugphyzz is an electronic database of standardized microbial annotations. It facilitates the creation of microbial signatures based on shared attributes, which are utilized for bug set enrichment analysis. The data also includes annotations imputed with ancestra state reconstruction methods.
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microbiomedatareproducibleresearchr01ca230551datapkg
6.34 score 6 stars 26 scriptsbugphyzz - A harmonized data resource and software for enrichment analysis of microbial physiologies
bugphyzz is an electronic database of standardized microbial annotations. It facilitates the creation of microbial signatures based on shared attributes, which are utilized for bug set enrichment analysis. The data also includes annotations imputed with ancestra state reconstruction methods.
Last updated
microbiomedatareproducibleresearchr01ca230551
5.37 score 6 stars 28 scriptsMicrobiomeBenchmarkData - Datasets for benchmarking in microbiome research
The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.
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experimentdatamicrobiomedatareproducibleresearchsequencingdatabioconductor-packager01ca230551datapkg
5.30 score 22 scriptsMicrobiomeBenchmarkData - Datasets for benchmarking in microbiome research
The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.
Last updated
experimentdatamicrobiomedatareproducibleresearchsequencingdatabioconductor-packager01ca230551
5.30 score 22 scripts